Time-Course Gene Set Analysis [R package TcGSA version 0.12.13]

TcGSA: Time-Course Gene Set Analysis

Implementation of Time-course Gene Set Analysis (TcGSA), a method for analyzing longitudinal gene-expression data at the gene set level. Method is detailed in: Hejblum, Skinner & Thiebaut (2015) <doi:10.1371/journal.pcbi.1004310>.

Version: 0.12.13

Depends: R (≥ 3.0.2), ggplot2 (≥ 2.0.0)

Imports: lme4 (≥ 1.0-4), reshape2, GSA, multtest, cluster, cowplot, graphics, grDevices, gtools, stringr, splines, stats, utils

Suggests: BiocManager, foreach, parallel, doParallel, dearseq, knitr, GEOquery, rmarkdown

Published: 2025年07月22日

DOI: 10.32614/CRAN.package.TcGSA

Author: Boris P Hejblum [aut, cre], Damien Chimits [aut], Anthony Devaux [aut]

Maintainer: Boris P Hejblum <boris.hejblum at u-bordeaux.fr>

BugReports: https://github.com/sistm/TcGSA/issues

License: GPL-2 | file LICENSE

URL: http://sistm.github.io/TcGSA/

NeedsCompilation: no

Citation: TcGSA citation info

Materials: README, NEWS

In views: Omics

CRAN checks: TcGSA results

Documentation:

Reference manual: TcGSA.html , TcGSA.pdf

Vignettes: TcGSA_userguide (source, R code)

Downloads:

Package source: TcGSA_0.12.13.tar.gz

Windows binaries: r-devel: TcGSA_0.12.13.zip, r-release: TcGSA_0.12.13.zip, r-oldrel: TcGSA_0.12.13.zip

macOS binaries: r-release (arm64): TcGSA_0.12.13.tgz, r-oldrel (arm64): TcGSA_0.12.13.tgz, r-release (x86_64): TcGSA_0.12.13.tgz, r-oldrel (x86_64): TcGSA_0.12.13.tgz

Old sources: TcGSA archive

Linking:

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