CRAN: Package SVAlignR

SVAlignR: Recovering Structure of Long Molecules from Structural Variation Data

Implements a method to combine multiple levels of multiple sequence alignment to uncover the structure of complex DNA rearrangements.

Version: 0.9.2

Depends: R (≥ 4.4)

Imports: methods, graphics, grDevices, oompaBase, Biostrings, NameNeedle, dendextend, ape, stringr, igraph, Polychrome, colorspace

Suggests: msa, viridisLite, R.rsp, knitr, rmarkdown

Published: 2025年09月24日

DOI: 10.32614/CRAN.package.SVAlignR

Author: Kevin R. Coombes [aut, cre]

Maintainer: Kevin R. Coombes <krc at silicovore.com>

License: Apache License (== 2.0)

URL: http://oompa.r-forge.r-project.org/

NeedsCompilation: no

CRAN checks: SVAlignR results

Documentation:

Reference manual: SVAlignR.html , SVAlignR.pdf

Vignettes: SVAlignR and Virus-Associated Cancer (source)

Downloads:

Package source: SVAlignR_0.9.2.tar.gz

Windows binaries: r-devel: SVAlignR_0.9.2.zip, r-release: SVAlignR_0.9.2.zip, r-oldrel: SVAlignR_0.9.2.zip

macOS binaries: r-release (arm64): SVAlignR_0.9.2.tgz, r-oldrel (arm64): SVAlignR_0.9.2.tgz, r-release (x86_64): SVAlignR_0.9.2.tgz, r-oldrel (x86_64): SVAlignR_0.9.2.tgz

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