Genomic Random Interval (GRIN) [R package GRIN2 version 2.0.0]

GRIN2: Genomic Random Interval (GRIN)

Improved version of 'GRIN' software that streamlines its use in practice to analyze genomic lesion data, accelerate its computing, and expand its analysis capabilities to answer additional scientific questions including a rigorous evaluation of the association of genomic lesions with RNA expression. Pounds, Stan, et al. (2013) <doi:10.1093/bioinformatics/btt372>.

Version: 2.0.0

Depends: R (≥ 4.2.0)

Imports: circlize, data.table, dplyr, forcats, ggplot2, graphics, grDevices, grid, magrittr, stats, stringr, survival, tibble, tidyselect, utils, writexl

Suggests: knitr, rmarkdown, biomaRt, gridGraphics, Gviz, ensembldb, GenomeInfoDb, ComplexHeatmap

Published: 2025年06月17日

DOI: 10.32614/CRAN.package.GRIN2

Author: Abdelrahman Elsayed ORCID iD [aut, cre, cph], Xueyuan Cao [aut], Lakshmi Anuhya patibandla [aut], Stanley Pounds [aut, cph]

Maintainer: Abdelrahman Elsayed <aelsayed at stjude.org>

BugReports: https://github.com/abdel-elsayed87/GRIN2/issues

License: GPL (≥ 3)

URL: https://github.com/abdel-elsayed87/GRIN2

NeedsCompilation: no

Materials: NEWS

CRAN checks: GRIN2 results

Documentation:

Reference manual: GRIN2.html , GRIN2.pdf

Vignettes: Introduction to the GRIN2 Package (source, R code)

Downloads:

Package source: GRIN2_2.0.0.tar.gz

Windows binaries: r-devel: GRIN2_2.0.0.zip, r-release: GRIN2_2.0.0.zip, r-oldrel: GRIN2_2.0.0.zip

macOS binaries: r-release (arm64): GRIN2_2.0.0.tgz, r-oldrel (arm64): GRIN2_2.0.0.tgz, r-release (x86_64): GRIN2_2.0.0.tgz, r-oldrel (x86_64): GRIN2_2.0.0.tgz

Old sources: GRIN2 archive

Linking:

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