Extract Drugs from Differential Expression Data from LINCS Database [R package DFD version 0.3.0]

Mohamed Soudy

DFD: Extract Drugs from Differential Expression Data from LINCS Database

Get Drug information from given differential expression profile. The package search for the bioactive compounds from reference databases such as LINCS containing the genome-wide gene expression signature (GES) from tens of thousands of drug and genetic perturbations (Subramanian et al. (2017) <doi:10.1016/j.cell.2017年10月04日9>).

Version: 0.3.0

Depends: signatureSearch, signatureSearchData

Imports: stringr, gprofiler2, scales, ggplot2, gridExtra, ggpubr

Published: 2025年02月11日

DOI: 10.32614/CRAN.package.DFD

Author: Mohamed Soudy [aut, cre]

Maintainer: Mohamed Soudy <MohmedSoudy2009 at gmail.com>

BugReports: https://github.com/MohmedSoudy/DFD/issues

License: GPL-3

URL: https://github.com/MohmedSoudy/DFD

NeedsCompilation: no

CRAN checks: DFD results [issues need fixing before 2025年12月16日]

Documentation:

Reference manual: DFD.html , DFD.pdf

Downloads:

Package source: DFD_0.3.0.tar.gz

Windows binaries: r-devel: DFD_0.3.0.zip, r-release: DFD_0.3.0.zip, r-oldrel: DFD_0.3.0.zip

macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): DFD_0.3.0.tgz

Old sources: DFD archive

Linking:

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