Distance Based Cell Lineage Reconstruction [R package DCLEAR version 1.0.13]

DCLEAR: Distance Based Cell Lineage Reconstruction

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020. References: Gong et al. (2021) <doi:10.1016/j.cels.202105008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.

Version: 1.0.13

Depends: R (≥ 4.1.0), tensorflow (≥ 2.2.0)

Imports: BiocParallel, dplyr, Matrix, matrixStats, ape, phangorn, Rcpp, igraph, methods, purrr, stringr, tidyr, rBayesianOptimization, rlang, BiocGenerics

LinkingTo: Rcpp, RcppArmadillo

Suggests: knitr, rmarkdown, markdown

Published: 2023年09月14日

DOI: 10.32614/CRAN.package.DCLEAR

Author: Il-Youp Kwak [aut, cre], Wuming Gong [aut]

Maintainer: Il-Youp Kwak <ikwak2 at cau.ac.kr>

License: GPL-3

URL: https://github.com/ikwak2/DCLEAR

NeedsCompilation: yes

Materials: README

CRAN checks: DCLEAR results

Documentation:

Reference manual: DCLEAR.html , DCLEAR.pdf

Vignettes: prediction for subchallenge 3 (source, R code)
DCLEAR : Distance based Cell LinEAge Reconstruction-weighted hamming (source, R code)

Downloads:

Package source: DCLEAR_1.0.13.tar.gz

Windows binaries: r-devel: DCLEAR_1.0.13.zip, r-release: DCLEAR_1.0.13.zip, r-oldrel: DCLEAR_1.0.13.zip

macOS binaries: r-release (arm64): DCLEAR_1.0.13.tgz, r-oldrel (arm64): DCLEAR_1.0.13.tgz, r-release (x86_64): DCLEAR_1.0.13.tgz, r-oldrel (x86_64): DCLEAR_1.0.13.tgz

Old sources: DCLEAR archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=DCLEAR to link to this page.