CRAN: Package CytoSimplex

CytoSimplex: Simplex Visualization of Cell Fate Similarity in Single-Cell Data

Create simplex plots to visualize the similarity between single-cells and selected clusters in a 1-/2-/3-simplex space. Velocity information can be added as an additional layer. See Liu J, Wang Y et al (2023) <doi:10.1093/bioinformatics/btaf119> for more details.

Version: 0.2.0

Depends: stats, methods, grDevices, R (≥ 3.6)

Imports: cli, ggplot2, Matrix, plot3D, plotly, RColorBrewer, Rcpp, rlang, viridis

LinkingTo: Rcpp, RcppArmadillo

Suggests: hdf5r, knitr, magick, patchwork, rmarkdown, Seurat, SeuratObject, SingleCellExperiment, SummarizedExperiment, testthat (≥ 3.0.0)

Published: 2025年04月23日

DOI: 10.32614/CRAN.package.CytoSimplex

Author: Yichen Wang ORCID iD [aut, cre], Jialin Liu ORCID iD [aut], Joshua Welch [cph]

Maintainer: Yichen Wang <wayichen at umich.edu>

License: GPL-3

URL: https://welch-lab.github.io/CytoSimplex/, https://github.com/welch-lab/CytoSimplex

NeedsCompilation: yes

Materials: README, NEWS

CRAN checks: CytoSimplex results

Documentation:

Reference manual: CytoSimplex.html , CytoSimplex.pdf

Vignettes: Simplex Visualization of Cell Fate Similarity in Single-Cell Data (source, R code)

Downloads:

Package source: CytoSimplex_0.2.0.tar.gz

Windows binaries: r-devel: CytoSimplex_0.2.0.zip, r-release: CytoSimplex_0.2.0.zip, r-oldrel: CytoSimplex_0.2.0.zip

macOS binaries: r-release (arm64): CytoSimplex_0.2.0.tgz, r-oldrel (arm64): CytoSimplex_0.2.0.tgz, r-release (x86_64): CytoSimplex_0.2.0.tgz, r-oldrel (x86_64): CytoSimplex_0.2.0.tgz

Old sources: CytoSimplex archive

Linking:

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