spotSegmentation

Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots

Spot segmentation via model-based clustering and gridding for blocks within microarray slides, as described in Li et al, Robust Model-Based Segmentation of Microarray Images, Technical Report no. 473, Department of Statistics, University of Washington.

Author Qunhua Li, Chris Fraley, Adrian Raftery Department of Statistics, University of Washington

Maintainer Chris Fraley

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("spotSegmentation")

Documentation

spotsegdoc.pdf	PDF	R Script
Reference Manual

Details

System Requirements
biocViews	Microarray , TwoChannel , QualityControl , Preprocessing
Depends	R , mclust
Imports
Suggests
License	GPL version 2 or higher
URL	http://www.stat.washington.edu/fraley
Depends On Me
Imports Me
Suggests Me
Development History	Bioconductor Changelog

Package Downloads

Package source	spotSegmentation_1.18.0.tar.gz
Windows binary	spotSegmentation_1.18.0.zip
MacOS X 10.4 (Tiger) binary	spotSegmentation_1.18.0.tgz
MacOS X 10.5 (Leopard) binary	spotSegmentation_1.18.0.tgz
Package Downloads Report	Downloads Stats