gene2pathway
Prediction of KEGG pathway membership for individual genes based
on InterPro domain signatures
The package takes a list of genes and predicts to which
KEGG pathway each gene maps to. This is done by looking at the
InterPro domains of each gene. Each prediction is assigned a
confidence score. The package also allows to predict connected
component membership of genes within signaling pathways.
Separate models for each organism supported by KEGG can be
trained.
Author
Holger Froehlich , contributions by Tim
Beissbarth
Maintainer
Holger Froehlich
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("gene2pathway")
Documentation
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GPL (>= 2) |
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