The package is used to detect extended, diffuse and compact blemishes on microarray chips. Harshlight automatically marks the areas in a collection of chips (affybatch objects) and a corrected AffyBatch object is returned, in which the defected areas are substituted with NAs or the median of the values of the same probe in the other chips in the collection. The new version handle the substitue value as whole matrix to solve the memory problem.
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("Harshlight")
| Package source | Harshlight_1.12.0.tar.gz |
|---|---|
| Windows binary | Harshlight_1.12.0.zip |
| MacOS X 10.4 (Tiger) binary | Harshlight_1.12.0.tgz |
| MacOS X 10.5 (Leopard) binary | Harshlight_1.12.0.tgz |
| Package Downloads Report | Downloads Stats |
| biocViews | |
|---|---|
| Depends |
R
,
affy
,
altcdfenvs
|
| Imports | |
| Suggests | |
| System Requirements | |
| License | GPL version 2 or later |
| URL | http://asterion.rockefeller.edu/Harshlight/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Development History | Bioconductor Changelog |