The stam package performs a biologically structured classification of microarray profiles according to clinical phenotypes. GO terms are used to link classification results to biological aspects. We call biologically focused signatures corresponding to these class predictions molecular symptoms. Thus, stam allows for molecular stratification of patients with complex phenotypes according to presence/absence patterns of molecular symptoms.
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("stam")
| Source | stam_1.8.0.tar.gz |
|---|---|
| Windows binary | stam_1.8.0.zip |
| OS X binary | stam_1.8.0.tgz |
| biocViews | |
|---|---|
| Depends | R, GO.db, Biobase, pamr, cluster, annaffy, methods, utils |
| Suggests | golubEsets, hu6800.db |
| Imports | |
| SystemRequirements | |
| License | GPL (>= 2) |
| URL | http://compdiag.uni-regensburg.de/software/index.shtml |
| dependsOnMe | |
| suggestsMe |