Extensible framework for interacting with multiple genome browsers (currently UCSC and Argo built-in) and manipulating annotation tracks in various formats (currently GFF, BED and WIG built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("rtracklayer")
| Source | rtracklayer_1.0.0.tar.gz |
|---|---|
| Windows binary | rtracklayer_1.0.0.zip |
| OS X binary | rtracklayer_1.0.0.tgz |
| biocViews | |
|---|---|
| Depends | R, Biobase, methods, RCurl |
| Suggests | Biostrings |
| Imports | XML, rJava |
| SystemRequirements | |
| License | Artistic-2.0 |
| URL | |
| dependsOnMe | |
| suggestsMe |