PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("pcot2")
| Source | pcot2_1.8.0.tar.gz |
|---|---|
| Windows binary | pcot2_1.8.0.zip |
| OS X binary | pcot2_1.8.0.tgz |
| biocViews | |
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| Depends | R, grDevices, Biobase, amap |
| Suggests | multtest, hu6800, KEGG, mvtnorm |
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| License | GPL version 2 or newer |
| URL | |
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