sagenhaft

Collection of functions for reading and comparing SAGE libraries

This package implements several functions useful for analysis of SAGE (Serial Analysis of Gene Expressen) data, i.e. extraction of a SAGE library from sequence files, sequence error correction, library comparison.

Author Tim Beissbarth , with contributions from Gordon Smyth and Lavinia Hyde .

Maintainer Tim Beissbarth

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("sagenhaft")

Vignettes (Documentation)

Package Downloads

SAGEnhaft.pdf

Source	sagenhaft_1.8.0.tar.gz
Windows binary	sagenhaft_1.8.0.zip
OS X binary	sagenhaft_1.8.0.tgz

Details

Suggests
biocViews	SAGE
Depends	R, SparseM
Imports
SystemRequirements
License	GPL version 2 or newer
URL	http://tagcalling.mbgproject.org
dependsOnMe
suggestsMe