Non-parametric bootstrap and permutation resampling-based multiple testing procedures for controlling the family-wise error rate (FWER), generalized family-wise error rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate (FDR). Single-step and step-wise methods are implemented. Tests based on a variety of t- and F-statistics (including t-statistics based on regression parameters from linear and survival models) are included. Results are reported in terms of adjusted p-values, confindence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially expressed genes in DNA microarray experiments.
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("multtest")
| Source | multtest_1.18.0.tar.gz |
|---|---|
| Windows binary | multtest_1.18.0.zip |
| OS X binary | multtest_1.18.0.tgz |
| biocViews | |
|---|---|
| Depends | R, methods, Biobase, survival |
| Suggests | |
| Imports | |
| SystemRequirements | |
| License | LGPL |
| URL | |
| dependsOnMe | ABarray, LMGene, OCplus, SAGx, aCGH, adSplit, globaltest, siggenes, webbioc |
| suggestsMe | GOstats, GlobalAncova, annaffy, ecolitk, maigesPack, oneChannelGUI, pcot2, safe, topGO, xcms |