The lumi package provides an integrated solution for the Illumina microarray data analysis. It includes functions of Illumina BeadStudio data input, quality control, BeadArray-specific variance stabilization, normalization and gene annotation at the probe level.
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("lumi")
| Source | lumi_1.4.0.tar.gz |
|---|---|
| Windows binary | lumi_1.4.0.zip |
| OS X binary | lumi_1.4.0.tgz |
| biocViews | |
|---|---|
| Depends | R, Biobase, affy, mgcv, annotate, methods |
| Suggests | beadarray, limma, vsn, lumiBarnes, lumiHumanV1, genefilter, geneplotter, RColorBrewer |
| Imports | |
| SystemRequirements | |
| License | LGPL version 2 or newer |
| URL | |
| dependsOnMe | |
| suggestsMe | beadarray |