The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data (almost 200,000 experiments). Given the rich and varied nature of these data, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("GEOquery")
| Source | GEOquery_2.2.1.tar.gz |
|---|---|
| Windows binary | GEOquery_2.2.1.zip |
| OS X binary | GEOquery_2.2.1.tgz |
| biocViews | |
|---|---|
| Depends | methods, Biobase, RCurl |
| Suggests | limma |
| Imports | |
| SystemRequirements | |
| License | GPL version 2 |
| URL | |
| dependsOnMe | |
| suggestsMe |