CGHcall

Calling aberrations for array CGH tumor profiles.

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author Sjoerd Vosse & Mark van de Wiel

Maintainer Sjoerd Vosse

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("CGHcall")

Vignettes (Documentation)

Package Downloads

CGHcall.pdf

Source	CGHcall_1.0.1.tar.gz
Windows binary	CGHcall_1.0.1.zip
OS X binary	CGHcall_1.0.1.tgz

Details

Suggests
biocViews	Microarray , DNACopyNumber , Preprocessing , Visualization
Depends	R, impute, DNAcopy
Imports
SystemRequirements
License	GPL (http://www.gnu.org/copyleft/gpl.html)
URL
dependsOnMe
suggestsMe